Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs112533069 chr6:15211657 C/T 0.000123 131 37.53 45.93 NA KM Plot
TGCT rs11255761 chr10:8628174 C/A 3.88E-7 133 43.68 33.53 17.58 KM Plot
TGCT rs112574597 chr20:57202148 CTGAGACCA/C 4.43E-9 129 37.2 60.63 9.02 KM Plot
TGCT rs112588913 chr13:21844277 C/T 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs112698361 chr2:29496827 T/C 0 134 42.27 25.02 0.57 KM Plot
TGCT rs112743744 chr14:78143407 G/C 7.4E-5 134 45.1 39.38 18.07 KM Plot
TGCT rs112784543 chr7:127759893 G/A 1.25E-13 134 45.1 36.23 17.1 KM Plot
TGCT rs11306877 chr8:116914050 TA/T 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs113145976 chr6:28438650 T/C 0 132 46.53 25 0.57 KM Plot
TGCT rs113231411 chr5:74583218 T/C 1.81E-5 128 45.47 28.8 9.27 KM Plot
TGCT rs113267847 chr5:1816959 G/A 5.54E-6 134 42.27 41.97 24.73 KM Plot
TGCT rs11326931 chr17:39337781 CT/C 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs113297557 chr13:21844412 T/C 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs113344010 chr17:39366355 A/AGG 5.32E-7 130 13.17 46.03 42.18 KM Plot
TGCT rs113699397 chr16:67542152 C/CT 0 127 48.35 25.55 0.57 KM Plot